TDM GMS Browse 5.4

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ICIS BROWSE Application

New Features in Version 5.4

• 27/05/06 CHANGED COP PROCESSING FOR LISTS. ALL PEDIGREES ARE NOW FETCHED BEFORE COP PROCESSING BY SUBROUTINE LCOP. A MAXIMUN OF 20000 DISTINCT LINES MAY BE PRESENT IN THE COMPLETE PEDIGREE TREE FOR ALL GERMPLASM IN THE LIST (DIMENSION OF GTREE ETC) SURPRISINGLY THIS DOES NOT SEEM TO SPEED UP PROCESSING.
• 28/05/06 PRINT OUT LEADING EIGEN VECTORS OF THE COP MATRIX LABELED WITH A COLUMN OF GIDS FOR ORDINATION PLOTS.
• 01/06/06 ADDED SPARSE MATRIX COPVALS WHICH STORES INTERMEDIATE COP VALUES FOR RE-USE IN COMPUTING COPS. THIS SPEEDS UP THE COP CALCULATIONS
• 07/06/06 ADDED COMMAND .EXT TO EXPORT A PEDIGREE TREE FOR A LIST BUT IT IS NOT VERY CLEAR HOW USEFUL THIS WILL BE SINCE THE RELATIONSHIPS ARE LOST IN THE EXPORTED LIST
• 10/07/06 INCREASED BUFFER (MXLST) TO 500 FOR DEPENDENCIES IN SUBROUTINE LREPLACE AND ADDED CHECKS FOR DEPENDENCIES ALREADY ENTERED IN THE BUFFER.
• 24/09/06 INCREASED PRINT FIELDS FOR GIDS
• 05/12/06 MODIFIED THE '.EXT LST' COMMAND TO EXPORT THE BROWSE TREE STRUCTURE FOR A LIST TO THE LOG FILE
• 05/12/06 MODIFIED .OPT LIST TO PRESENT LISTS BY PAGES
• 05/12/06 ADDED COMMAND .MLS TO DISPLAY MLS ANCESTORS OF A GID
• 22/01/07 UPDATED TO FORTRAN 9
• 02/02/07 USED IMSL TO COMPUTE THE EIGEN STRUCTURE OF COP MATRICES IN SUBROUTINE GIV AND ADDED A RANK TWO ORDINATION PLOT
• 16/02/07 USED VARIABLE DIMENSION IN DDPNDS, ALLOW PASSAGE THROUGH THE ILLEGAL GROUP TRAP IN DDPNDS AT STATEMENT 11 -2 AND ORRECTED ERROR IN PORT OF GETDATM
• 16/02/07 SET MAXIMUM DEPENDENCIES IN DDPNDS TO 2000
• 17/02/07 Corrected error in WRTGERM
• 13/03/07 Changes inbreeding assumption for lines with unknown source to F4 (COI=15/16) from homozygosity (COI=1) at lines 1-7 and 5-7 in SUBROUTINE COP.
• 17/05/07 Added Change UID to print of changes in WRTGERM

User Manual

TDM_GMS_Browse